#Tutorial clc genomics workbench registration
#Tutorial clc genomics workbench software

#Tutorial clc genomics workbench software

All USC users can freely access the software on our workstation computers.Equipped with dual-CPU and 512GB RAM, one of our workstation computers is configured specifically to handle large data set and computationally intensive tasks such as de novo genome assembly and sequencing alignment.Wilson Dental Library, the University Park Campus.Norris Medical Library (RM203A), the Health Sciences Campus. CLC Genomics Workbench is a comprehensive suite of bioinformatics tools packaged into a user-friendly graphical environment.For prokaryotes, annotations of type gene are considered. The key annotation types for RNA-Seq analysis of eukaryotes are of type gene and type mRNA. The software has been installed on multiple workstation computers: RNA-Seq analysis Based on an annotated reference genome and mRNA sequencing reads, the CLC Genomics Workbench is able to calculate gene expression levels as well as discover novel exons.On workstation computers in the libraries.

#Tutorial clc genomics workbench registration

Mandatory registration is required for installing CLC Gx on your computer. Please submit the Local Installation Request Form.The computer must be connected to the USC network, either via Ethernet cable on campus or via USC VPN when using wireless (applies to both on- and off-campus wireless connections).Minimum hardware requirement for de novo assembly, metagenomics, and raw reads alignment:: 32GB RAM and Intel i7-6700 or faster processor.Once the import is completed, you should see two new files visible in the Navigation Area of the Workbench. You can take a look to see if the import is still running by clicking on the tab called Processes in the bottom left side of the Workbench. Minimum hardware requirement for general use: 16GB RAM and Intel i7-2600 or faster processor. Tutorial: De Novo Assembly of Paired Data Tip: Importing large datasets can take some time.ChIP-Sequencing is used to analyze the interactions of proteins with genomic DNA. This tutorial makes use of the peak-shape based Transcription Factor ChIP-Seq tool present in CLC Genomics Workbench 7.5 and higher. The license consists of TWO concurrent user seats. This tutorial takes you through a complete ChIP sequencing workflow using the CLC Genomics Workbench. USC has licensed CLC Gx for the free use of USC faculty, students and staff.